Accounting for technical noise in single-cell RNA-seq experiments

…, AA Kołodziejczyk, X Zhang, V Proserpio, B Baying… - Nature …, 2013 - nature.com
Single-cell RNA-seq can yield valuable insights about the variability within a population of
seemingly homogeneous cells. We developed a quantitative statistical method to distinguish …

Guidelines for the use of flow cytometry and cell sorting in immunological studies

…, N Baumgarth, D Baumjohann, B Baying… - European journal of …, 2019 - Wiley Online Library
These guidelines are a consensus work of a considerable number of members of the
immunology and flow cytometry community. They provide the theory and key practical aspects of …

[HTML][HTML] Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition

…, V Foteva, KN Natarajan, B Baying… - Nature …, 2020 - nature.com
The endothelial to haematopoietic transition (EHT) is the process whereby haemogenic
endothelium differentiates into haematopoietic stem and progenitor cells (HSPCs). The …

[HTML][HTML] Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network

…, K Voordeckers, JF Christiaens, B Baying… - Nature …, 2014 - nature.com
The emergence of new genes throughout evolution requires rewiring and extension of
regulatory networks. However, the molecular details of how the transcriptional regulation of new …

Epigenetic program and transcription factor circuitry of dendritic cell development

…, S Mitzka, S Hänzelmann, B Baying… - Nucleic acids …, 2015 - academic.oup.com
Dendritic cells (DC) are professional antigen presenting cells that develop from hematopoietic
stem cells through successive steps of lineage commitment and differentiation. Multipotent …

AXL inhibition in macrophages stimulates host-versus-leukemia immunity and eradicates naïve and treatment-resistant leukemia

…, P Dinse, E Alberto, MC Buck, JJM Landry, B Baying… - Cancer discovery, 2021 - AACR
Alternatively primed myeloid cells predict negative outcome in leukemia. By demonstrating
that leukemia cells actively evade immune control by engaging AXL receptor tyrosine kinase …

Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis

…, K Kosim, C Celen, G Itır Perçin, P Collier, B Baying… - Elife, 2018 - elifesciences.org
10.7554/eLife.29312.001 Recent advances in single-cell transcriptomics techniques have
opened the door to the study of gene regulatory networks (GRNs) at the single-cell level. Here…

[HTML][HTML] Disruption of EXOC6B in a patient with developmental delay, epilepsy, and a de novo balanced t (2; 8) translocation

…, J Blake, E Haberlandt, B Baying… - European Journal of …, 2013 - nature.com
Most balanced chromosomal aberrations are not associated with a clinical phenotype, however,
in some patients they may disrupt gene structure. With the development of various next-…

Apoptotic Cell Exclusion and Bias‐Free Single‐Cell Selection Are Important Quality Control Requirements for Successful Single‐Cell Sequencing Applications

D Ordoñez‐Rueda, B Baying, D Pavlinic… - Cytometry Part …, 2020 - Wiley Online Library
Single‐cell sequencing experiments are a new mainstay in biology and have been advancing
science especially in the biomedical field. The high pressure to integrate the technology …

Virome analysis reveals no association of head and neck vascular anomalies with an active viral infection

…, WI Lipkin, C Kurz, J Ehrenreich, E Mack, B Baying… - in vivo, 2018 - iv.iiarjournals.org
Background/Aim: Vascular anomalies encompass different vascular malformations [arteriovenous
(AVM), lymphatic (LM), venous lymphatic (VLM), venous (VM)] and vascular tumors …